As Wonder Woman joins the Battle against Doomsday, she arrives just in time to save Batman from Doomsday's lethal thermal blast, deflecting the beams with her indestructible bracelets. She then jointly attacks Doomsday with Superman while Batman tries to expose the creature to Kryptonite, allowing its destruction. She relentlessly battles the monster, and despite Doomsday being stronger, Wonder Woman held her own, parrying a tremendous punch with the Sword of Athena, and then slicing off Doomsday's right arm with it. Eventually, Batman baits the monster into coming closer to her, allowing Wonder Woman to hurl the noose of her unbreakable Lasso of Hestia around his torso.
The "Lies" story arc runs parallel with and explores Diana's search. No longer able to get into Mount Olympus, Diana tracks down Barbara Ann Minerva, the Cheetah, to get help. Cheetah agrees to help in exchange for Diana aiding her in killing the god Urzkartaga and ending Minerva's curse. The pair battle their way through Urzkartaga's minions, the Bouda, and defeat Andres Cadulo, a worshiper of Urzkartaga that planned to sacrifice Steve Trevor to the plant god. Once reverted to her human form, Minerva agreed to help Wonder Woman find her way back to Paradise Island. During this time, Wonder Woman reconnects with Steve. Minerva eventually realizes Paradise Island is an embodiment of emotion instead of a physical place, so Wonder Woman and Steve head out to find the island. They succeed and Wonder Woman is greeted by her mother and sisters, though Steve senses something is wrong. Wonder Woman comes to realize nothing is as she remembers and, upon using the Lasso of Truth, discovers everything she thought she knew was a lie: she never really returned to Themyscira after departing with Steve years earlier. The revelation shatters Diana's mind and she is left nearly insane. Veronica Cale, a businesswoman who has been desiring to find Themyscira and the leader of Godwatch, sends a military group called Poison after her, but Diana's state has left her vulnerable and oblivious to the danger she and Steve are in. Steve wards them off long enough for them to be rescued, and reluctantly places Diana in a mental hospital so she can get help. While there she comes to grasp the reality she thought she knew was false, eventually coming out of her stupor and able to rejoin the others in tracking down Veronica Cale, who is trying to find Themyscira.
The final remaining relics Darkseid needed were being guarded by A.R.G.U.S. at their HQ, so Darkseid decided to use a Boom Tube to transport the building and all its contents to his base in the Amazon Rainforest. The Female Furies retrieved the relics and put them into place while Wonder Woman fought Darkseid. With the relics' power, Darkseid was able to open a portal to Themyscira. As it is impossible for one who has set foot on Themyscira to return after leaving, Diana was unable to follow Grail through the portal. Grail invaded and began transforming the Amazons into creatures resembling Darkseid's Parademons. As Jason had never actually set foot on Themyscira, he followed Grail and met his mother Hippolyta for the first time since his birth. While Jason and Hippolyta fought off the transformed Amazons, Wonder Woman was able to defeat Darkseid through her love for her deceased father, Zeus, and her half-siblings, calling their spirits out of Darkseid's body and destroying him from the inside. The Amazons captured Grail and imprisoned her in the prison beneath Themyscira, alongside Ares, while Darkseid re-emerged somewhere on Earth. Jason was gifted a magical spear from his mother and returned to Earth.
Following the events of Infinite Crisis, she disappeared for a year in order to rediscover herself, and took part briefly in the events of 52. In the span of One Year Later, she was re-imagined once again and was forgiven by Batman and Superman while given her third ongoing monthly title. Batman helped her establish a role at the Department of Metahuman Affairs under the name of Diana Prince (paying homage to her golden age alter ego.) She worked alongside Tom Tresser and eventually became romantically involved with him. A move among fans across the different companies occurred with characters reverting to their original numbering of series (this for instance happened to Iron Man at Marvel as well) and the third Wonder Woman series was relaunched with Wonder Woman #600. This was actually accurate at the time as it was the indeed the 600 issue released (not including issues numbered otherwise such as with a zero or a million). Issue 600 was used as a chance to reinvent the character as she discovers herself with no memories and in a new costume. This was a short lived experiment as the entire DC lineup was soon to be re-imagined into the new 52, though certain aspects of her redesigned costume remained.
Due to the format of most golden age comics, the majority of story arcs at the time for all characters were the same, Wonder Woman included. More accurately that is to say that there were not story arcs at all, as issues contained two to three stories, all of which started and concluded within the issue in question. There was therefore not much continuity in Wonder Woman until she reached the silver age. The few exceptions to this were in issues which contained a common theme, such as Wonder Woman meeting some leprechauns and each of the three stories dealing with that. Alternately there were some common themes for the character at the time, one of which was dealing with enemy saboteurs. These were mostly contemporary, and thus started as either the National Socialists in Germany or the Imperial Japanese. Later these became others.
Diana's treacherous paternal half-brother, based on the Greek mythological god of war, who masquerades as a speaker for peace on the Imperial War Cabinet as part of his deceptive master plan of conquest and destruction. Describing the Sir Patrick persona of his character, Thewlis said, "Sir Patrick's entire drive through the other half of the story is to bring about the armistice. That's his whole intention no matter what's going on. He meets Diana and see in her somebody who is sympathetic to his cause, quite vehemently so."
In 1954, Dr. Fredric Wertham alleged that there were lesbian subtexts to Wonder Woman and claimed comics contributed to juvenile delinquency in his book Seduction of the Innocent where despite a very obvious heterosexual relationship with Steve Trevor, Wertham asserted that Wonder Woman’s association with the Holliday Girls could be interpreted as a lesbian relationship. The Comics Code Authority was then introduced in reaction to Wertham 's claims against the entire industry.